Visualize Transcriptomics data
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Combined stress: Transcriptome data

Dynamic Drop Down List Search unique/common genes based on Plant

STEP I : Select a plant species:
Choose a Plant:






STEP II: Select a stress combination:





Choose a Stress combination:






STEP III: Query SCIP database for desired genes:
Query for desired genes:









  • SCIP database hosts a comprehensive collection of combined stress responsive differentially expressed genes (DEGs) identified in publically available transcriptomic data from various plant species.

  • Transcriptomic data represented here includes a list of DEGs, log fold change and absolute fold change over control, obtained after in-house analysis of the combined stress transcriptome available in the public domain.

  • This section provides an option for browsing transcriptomics data, based on drop down based selection of plants and stress combination.

  • Result is presented in the form of interactive bootstrap table, that displays informations about list of differentially expressed genes (DEGs) genes expressed uniquely and commonly under individual and combination of stresses along with gene annotation and fold change in expression.

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  • The data also includes information about DEGs nature of change in expression i.e whether it is expressed uniquely or common or tailored in a particular stress combination.

  • The DEGs has been mapped to KEGG pathway wherever possible

  • In cases where pathway information was not available, DEGs has been mapped to KEGG genes

  • KEGG Genes and pathway link can aid users to navigate through several other databases (E.g., TAIR, NCBI etc.) interlinked with SCIP database, and fetch other metadata like detailed gene annotation.

  • User selection based output download of entire data is also provided